Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIGIIGAMEEEVTILKNKLTQLSEISVAHVKFYTGILKDREVVITQSGIGKVNAAISTTLLINKFKPDVIINTGSAGALDESLNVGDVLISDDVKYHDADATAFGYEYGQIPQMPVAFQSSKPLIEKVSQVVQQQQLTAKVGLIVSGDSFIGSVEQRQKIKKAFPNAMAVEMEATAIAQTCYQFNVPFVVVRAVSDLANGEAEMSFEAFLEKAAVSSSQTVEALVSQL
4G41 Chain:B ((8-234))
-IGIIAAMEEELSLLLANLLDAQEHQVLSKTYYTGRFGKHELILVQSGVGKVMSAMTVAILVEHFKAQAIINTGSAGAVASHLAIGDVVVADRLVYHDVDATAFGYAYGQMAGQPLYYDCDPQFVAIFKQVLKHEKTNGQVGLIATGDSFVAGQDKIDQIKTAFSNVLAVEMEGAAIAQAAHTAGKPFIVVRAMSDTAAHDANITFDQFIIEAGKRSAQILMTFLENL
General information:
TITO was launched using:
RESULT:
Template:
4G41.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -131274 for 2028 contacts (-64.7/contact) +
2D Compatibility (PS) -24779 + (NN) -11175 + (LL) 208
1D Compatibility (HY) -20800 + (ID) 4750
Total energy: -192570.0 ( -94.96 by residue)
QMean score : 0.606
(partial model without unconserved sides chains):
PDB file :
Tito_4G41.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4G41-query.scw
PDB file :
Tito_Scwrl_4G41.pdb
: