Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKVVVQRVKEA--SVTNDTLN-----NQIKKGYCLLVGIGQNSTEQDADVIAKKIANARLFEDDNNKLNFNIQQMNGEILSVSQFTLYADVKKGNRPGFSNSKNPDQAVKIYEYFNDALRAY--GLTVKTGEFGTHMNVSINNDGPVTIIYESQDGKIQ
3KO9 Chain:B ((1-159))
MRVVIQRVKGAILSVR-----ELEIISEIKNGLICFLGIHKNDTWEDALYIIRKCLNLRLWNNDNKTWDKNVKDLNYELLIVSQFTLFGNTKKGNKPDFHLAKEPNEALIFYNKIIDEFKKQYNDDKIKIGKFGNYMNIDVTNDGPVTIYIDTHD----
General information:
TITO was launched using:
RESULT:
Template:
3KO9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -60161 for 1027 contacts (-58.6/contact) +
2D Compatibility (PS) -15809 + (NN) -8060 + (LL) 208
1D Compatibility (HY) -14800 + (ID) 3050
Total energy: -101672.0 ( -99.00 by residue)
QMean score : 0.534
(partial model without unconserved sides chains):
PDB file :
Tito_3KO9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3KO9-query.scw
PDB file :
Tito_Scwrl_3KO9.pdb
: