Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ---------MDTKQLKQDIIDYAYTI-GIDSIGFTTADPFDELKQKLEAYHANG------YASGFEESDIALRTEPKLSLPTARSIIAIAVG---YPNKLKGAPKSVRGDRRGLFARASWGQDYHTIMRKRLDMLAAFIESKVPDVEIKSMVDTGVLSDRAVAERAGLGFVGRNGFVINPKLGTWTYLGEMLVSIP--FEPDDPLLDSCGDCTICVDRCPTSALVGNGQLNSQKCISFLTQTKGYMPDQYR----------YKIGNRLYGCDTCQQVCPKNRGINTEQDDIILEPEILKPRLVPLLRMSNKEFKQTYGHLAGAWRGKKPIQRNAILALAHFNEVDAIPELKKVATTDERPMIRATAYWAIGQILGEEARDFINANYDQEDAEVQNEMIKGLDTRRE--------------- |
| 4R2F Chain:A ((38-431)) | GAIKFWDMPWATPAYNDAAKKIAEGFSGANSKATYQIIQWNNFYQTFSSAIASKTGPAVSTGGGF----QAFQFEEQGQIAYADKVIEKLKSNGQFDDFLPGVVEPFKTSKG--YVAVPWQLDIRPLWYRKSLFEKA--GVGVPT-DWASLLEAG----KKLKGVGAVGFA--TGSGAGNNIGNHLMIMMMLNNGGGVFTKDGELDVLNDRNVEAVEFL--LELVSNGVIDP----AAVSYTTDNLNAQWKDSKAAYGMLTLGVPERVGDTSGDIVVASPIAGPHGDKAALIFPNNIMMYTNTPSQEASEEFVVYYLGKLKELWQQKLM---NALPVFKSITEMPEFTADPNNVKIVNEYVPIAKTFASQGTALS---ANLAALDGGQALNQFTQTVLTGKTDAKSALTAFDTGLKSVLKK |
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General information:
TITO was launched using:
| RESULT:
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Template: 4R2F.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -29776 for 2826 contacts (-10.5/contact) +
2D Compatibility (PS) -36579 + (NN) -5943 + (LL) 1960
1D Compatibility (HY) -8000 + (ID) 2800
Total energy: -81138.0 ( -28.71 by residue)
QMean score : 0.257
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