Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---MEAFLGALEFQENEYEEFKELYESLKTKQKPHTLFISCVDSRVVPNLITGTQPGELYVIRNMGNVIPPKTSYKESLSTIASVEYAIAHVGVQNLIICGHSDCGACGSIHLIHDETTKAKTPYIANWIQFLEPIKEELKNHPQFSNHFAKRSWLTERLNARLQLNNLLSYDFIQERVINNELKIFGWHYIIETGRIYNYNFESHFFEPIEETIKQRISHENF----
1EKJ Chain:A ((12-221))
EASERIKTGFLHFKKEKYDKNPALYGELAKGQSPPFMVFACSDSRVCPSHVLDFQPGEAFVVRNVANLVPPYDQ-AKYAGTGAAIEYAVLHLKVSNIVVIGHSACGGIKGLLS-FPFDGTYSTDFIEEWVKIGLPAKAKVKAQHGDA-PFAELCTHCEKEAVNASLGNLLTYPFVREGLVNKTLALKGGYYDFVKGSFELWGLEFGLS---------------STFSV
General information:
TITO was launched using:
RESULT:
Template:
1EKJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -111964 for 1517 contacts (-73.8/contact) +
2D Compatibility (PS) -21756 + (NN) -9356 + (LL) 1376
1D Compatibility (HY) -12400 + (ID) 3000
Total energy: -157100.0 ( -103.56 by residue)
QMean score : 0.481
(partial model without unconserved sides chains):
PDB file :
Tito_1EKJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1EKJ-query.scw
PDB file :
Tito_Scwrl_1EKJ.pdb
: