Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MILTAMQDAIGRTPIFKFTRKDYPIPLKSAIYAKLEHLNPGGSVKDRLGQYLIKEAFRTRKIT-STTTIIEPTAGNTGIALALVAIKHHLKTIFVVPKKFSTEKQQIMRALGALVINTPTSEGISGAIKKSKELAESIPDSYLPLQFENPDNPAAYYHTLAPEIVQELGTNLTSFVAGIGSGGTFAGMAKYLKERIPNIRLIGVEP-EGSILNGGEPGPHEIEGIGVEFIPPFFANLDIDRFET---ISDEEGFSYTRKLAKKNGLLVGSSSGAAFAAALKEVQRLPE--GSQVLTIFPDMADRYLSKGIYS |
3VBE Chain:D ((33-328)) | ---------IGRTPLVYLNKVTEGCGAYVAV--KQEMMQPTASIKDRPAYAMITDAEEKNLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDPAKGMGGTVKKAYELLENTPNAHMLQQFSNPANTQVHFETTGPEIWEDTNGQVDIFVMGIGSGGTVSGVGQYLKSKNPNVKIYGVEPSESNVLNGGKPGPHHITGNGVGFKPDI---LDLDVMEKVLEVSSEDAVNMARVLALKEGLMVGISSGANTVAALRLAQ-LPENKGKLIVTVHPSFGERYLSSVLFQ |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VBE.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -101352 for 2576 contacts (-39.3/contact) +
2D Compatibility (PS) -31733 + (NN) -13903 + (LL) 1712
1D Compatibility (HY) -19200 + (ID) 6150
Total energy: -170626.0 ( -66.24 by residue)
QMean score : 0.593
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