Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
------------------MRLLIALVLFLWWLNLGAKEADFISDWEYGLALYKNPRGVACAKCHGIKGEQQEIT--FYYEKGEKKILYAPKINHLDFKTFKDALSLGKGMMPKYNLNLEEIQAIYLYITSLGHKDERKDPSKP--
3O0R Chain:C ((5-146))
FTKGMARNIYFGGSVFFILLFLALTYHTEKTLPERTNEAAMSAAVVRGKLVWEQN---NCVGCHTLLGEGAYFAPELGNVVGRRGGEEGFNTFLQAWMKIQPLNVPGRRAMPQFHLSEGQVDDLAEFLKWSSKIDTNQWPPNKEG
General information:
TITO was launched using:
RESULT:
Template:
3O0R.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -18533 for 748 contacts (-24.8/contact) +
2D Compatibility (PS) -12422 + (NN) -5494 + (LL) 120
1D Compatibility (HY) 800 + (ID) 850
Total energy: -36379.0 ( -48.64 by residue)
QMean score : 0.300
(partial model without unconserved sides chains):
PDB file :
Tito_3O0R.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3O0R-query.scw
PDB file :
Tito_Scwrl_3O0R.pdb
: