Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKTKAGFVALIGKPNAGKSTLLNTLLNAHLALVSHKANATRKLMKCIVPFK------------------DKEGYESQIIFLDTPGLHHQEKLLNQCMLSQALKAMGDAELRVFLASVHDDLKGYEEFLSLCQKPH----ILALSKIDTATHKQVLQKLQEYQKYSSQFLA----LVPLSAKKSQNLNALLECISKHLSPS------------AWLFEKDLMSDEKMRDIYKEIIRESLFDFLSDEIPYESDVMIDK--FIEEERIDKVYARIIVEKESQKKIVIGKNGVNIKRIGTNARLKMQEVGEKKVFLNLQVIAQK-SWSKEEKSLQKLGYIYQRNRD----------------------------------------------------------------------- |
| 1KK1 Chain:A ((6-410)) | SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPG---HEALMTTMLAGASLM---DGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPTPKRDPNKPPKMLVLRSFDVNKPGKLVGGVLDGSIVQGKLK--VGDEIEIRPGVPYEEHGRIKYEPITTEIVSLQAGGQFVEEAYPGGL------VGVGTKLDPYLTKGDL--MAGNVVGKPGKLPPVWDSLRLEVHLLERVVEQELKVEPIKRKEVLLLNVGTARTMGLVTGLGKDEIEVKLQIPVCAEPGDRVAISRQIGSRWRLIGYGIIKE |
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General information:
TITO was launched using:
| RESULT:
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Template: 1KK1.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -63830 for 2176 contacts (-29.3/contact) +
2D Compatibility (PS) -29581 + (NN) 1987 + (LL) 1132
1D Compatibility (HY) -7600 + (ID) 2500
Total energy: -100392.0 ( -46.14 by residue)
QMean score : ?
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