Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKCEKRVFDSLPSTQTYLLEKLKSNKLKAPVLVLAKNQSAGIGSRGNIWEIVES-ALTFSLALNASDLPKDLPMQASALYLGFLFKEVLKELG-SQTWLKWPNDLYLGDQKIGGVMVNVYK-----GMRVCGIGVNRVSTK----------WACLDI----GASDDWIIESFLKKIEENL-FWG-----EVLSKYAL-EFHRSNSFNFHNDWGEAVSLKDAELLEDGRICIKGKIYDRM
3RKX Chain:A ((84-309))
----FSEVYDSIDSTQLAAKKSLV-G-NQSSFFILSDEQT------------SKGQGLWMSVVLRPNV-AFS-MISKFNLFIALGIRDAIQHFSQDEVKVKWPNDIYIDNGKVCGFLTEMVANNDGIEAIICGIGINLTQQLENFDESIRHRATSIQLHDKNKLDRYQFLERLLQEIEKRYNQFLTLPFSEIREEYNAASNIWNRTLLFTE-N-KQFKGQAIDLDYDGYLIVRDEAGESH
General information:
TITO was launched using:
RESULT:
Template:
3RKX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -123099 for 1350 contacts (-91.2/contact) +
2D Compatibility (PS) -19889 + (NN) -5516 + (LL) 1024
1D Compatibility (HY) -12400 + (ID) 1800
Total energy: -161680.0 ( -119.76 by residue)
QMean score : 0.527
(partial model without unconserved sides chains):
PDB file :
Tito_3RKX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3RKX-query.scw
PDB file :
Tito_Scwrl_3RKX.pdb
: