Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNTMNSVLECKELALYGGSFDPLHKAHLAIIEQTLELLPFVQLIVLPAYQNPFKKPCFLDAKTRFKELERALKGMPRVLLSDFEIKQERAVPTIESVLHFQKLYRPKTLYLVIGADCLRHLSSWTNAKELLKRVELVVFERIGYEEIQFKGRYHPLKGIDAPISSSAIRASLGV------------------------
1KAM Chain:A ((1-189))
---------SKKIGIFGGTFDPPHNGHLLMANEVLYQAGLDEIWFMPNQIPD--------SFHRVEMLKLAIQSNPSFKLELVEMEREGPSYTFDTVSLLKQRYPNDQLFFIIGADMIEYLPKWYKLDELLNLIQFIGVKRPGFH-VETPYPLLFADVPEFEVSSTMIRERFKSKKPTDYLIPDKVKKYVEENGLYES
General information:
TITO was launched using:
RESULT:
Template:
1KAM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -119051 for 1111 contacts (-107.2/contact) +
2D Compatibility (PS) -16825 + (NN) -7825 + (LL) 1264
1D Compatibility (HY) -10400 + (ID) 1850
Total energy: -154687.0 ( -139.23 by residue)
QMean score : 0.561
(partial model without unconserved sides chains):
PDB file :
Tito_1KAM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KAM-query.scw
PDB file :
Tito_Scwrl_1KAM.pdb
: