Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MLVTRFKKAFISYSLGVLVVSLLLNVCNASAQEVKVKDYFGEQTIKLPVSKIAYIGSYVEVPAMLNVWDRVVGVSDYAFKDDIVKATLKGEDLKRVKHMSTDHTAALNVELLKKLSPDLVVTF--VGNPKAVEHAKKFGISFLSFQETTIAEAMQAMQAQATVL--EIDASKKFAKMQETLDFIAERLKGVKKKKGV-ELFHKANKISGHQAISSDILEKGGIDNFGLKYVKFGRADISVEKIVKENPEIIFIWWVSPLTPEDVLNNPKFSTIKAIKNKQVYKLPTMDIGGPRAPLISLFIALKAHPEAFKGVDINAIVKDYYKVVFDLNDAEIEPFLWH |
| 1N2Z Chain:A ((1-245)) | -----AAPRVITLSPANTELAFAAGI-------------------------------------------TPVGVSSY---------SDYPPQAQKIEQVSTWQG--MNLERIVALKPDLVIAWRGGNAERQVDQLASLGIKVMWVDATSIEQIANALRQLAPWSPQPDKAEQAAQSLLDQYAQLKAQYADKPKKRVFLQFGINPPFTSGKESIQNQVLEVCGGENI-FKDSRVPWPQVSREQVLARSPQAIVIT------GGPDQIPKIKQYWGEQLKIPVIPLTSDWFERA-------------------SPRIILAAQQLCNALSQVD---------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1N2Z.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -107055 for 1941 contacts (-55.2/contact) +
2D Compatibility (PS) -25850 + (NN) -7612 + (LL) 8096
1D Compatibility (HY) -8000 + (ID) 2100
Total energy: -142521.0 ( -73.43 by residue)
QMean score : 0.491
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