Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLDKSVPHISVIMVNHDATNYPEFHLPAGYSFCFYKDGLEEDWCRLQLETGQVLS---MDSIRARFETEFGNEKEKLTKRCIFVKAP--NGEIIGTAMLWDGNTF--GKIESRIHWVAVLDSHGGKGIAKALLSKILGL---NKSKFVYLTTQTGSYQAIYLYRKFGFEKYVGKTPENWKTVNFQEEKETAWQIIENKIAEHQA
1QSM Chain:A ((3-146))
---------------------------DNITVRFVTENDKEGWQRLWKSYQDFYEVSFPDDLDDFNFGRFL---DPNIKMWAAVAVESSSEKIIGMINFFNHMTTWDFKDKIYINDLYVDENSRVKGAGGKLIQFVYDEADKLGTPSVYWCTDESNHRAQLLYVKVGYKAPKIL------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1QSM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -75089 for 911 contacts (-82.4/contact) +
2D Compatibility (PS) -15006 + (NN) -7382 + (LL) 4448
1D Compatibility (HY) -4000 + (ID) 1350
Total energy: -98379.0 ( -107.99 by residue)
QMean score : 0.379
(partial model without unconserved sides chains):
PDB file :
Tito_1QSM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1QSM-query.scw
PDB file :
Tito_Scwrl_1QSM.pdb
: