Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-------------------------MAEVKEYKQLNGLALAYMGDAVYEKFIREYLLAA-GKTKPNQLHKTATKFVSAKGQAVALKAMIAEGFLTEEEDRIAKRGRNAKSYTVPKNTDPGTYSMSTSFEAVLGYLYL------AGEMERLQEWMEKALEIVEKGVETN
1JFZ Chain:A ((1-148))
GMKMLEQLEKKLGYTFKDKSLLEKALTHVSYSKKEHYETLEFLGDALVNFFIVDLLVQYSPNKREGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKRGK------------------INETIIGDVFEALWAAVYIDSGRDANFTRELFYKLFKEDILSAIKEGR--
General information:
TITO was launched using:
RESULT:
Template:
1JFZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -33845 for 811 contacts (-41.7/contact) +
2D Compatibility (PS) -12305 + (NN) -3531 + (LL) 668
1D Compatibility (HY) -7600 + (ID) 900
Total energy: -57513.0 ( -70.92 by residue)
QMean score : 0.445
(partial model without unconserved sides chains):
PDB file :
Tito_1JFZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JFZ-query.scw
PDB file :
Tito_Scwrl_1JFZ.pdb
: