Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -MTYLVTGATGGLGGYALNYLKELVPMSDIYALVRS--KEKGADLKAAGFNIRVGDYSDAESMKQAFAGIDRVLFVSGAPGNRQVEHE-----NVINAAKKAGVSYIAYTSFAGADKSTS-----ALAEDHFFTEKVIEKSGIAHTFLRNNWYFENEMPMIGGALSA-GKFVYA---AENGKVGWALKREYAEVAAKAVAGAG--FPEILELSGPLMTYEELTKALKEATGKDFDVISSDDKGFVENLVSVGLPQPVAEMFLSFQHDIKNDQLDVTSDDFEKALGKPLTNRVDALRELLK---- |
| 2WMD Chain:A ((5-299)) | KKLVVVFGGTGAQGGSVARTLLEDGTF-KVRVVTRNPRKKAAKELRLQGAEVVQGDQDDQVIMELALNGAYATFIVTNYWESCSQEQEVKQGKLLADLARRLGLHYVVYSGLENIKKLTAGRLAAAHFDGKGEVEEYFRDIGVPMTSVRLPCYFENLLSHFLPQKAPDGKSYLLSLPTGDVPMDGMSVSDLGPVVLSLLKMPEKYVGQNIGLSTCRHTAEEYAALLTKHTRKVVHDAKMTPEDYEKLG-----FPGARDLANMFRFYALRPDRD---IELTLRLNPKALTLDQWLEQHKGDFNL |
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General information:
TITO was launched using:
| RESULT:
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Template: 2WMD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -107589 for 2233 contacts (-48.2/contact) +
2D Compatibility (PS) -30209 + (NN) -19944 + (LL) 548
1D Compatibility (HY) -2000 + (ID) 2550
Total energy: -161744.0 ( -72.43 by residue)
QMean score : 0.543
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