Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNKVVVKNVTFGEGAPKICVPMVGKTVAALKEEAEMLQTIDLDVVEWRVDFFEDVKDLAKVEAALGEIRAILPETPILFTFRSAKEGGELAVSDEFYFELNETLAGTGKIDLVDVELFNEEADVLRLIETAHKNNVKVVMSNHDFDKTPAKEEIVSRLTRMEALGADLPKIAVMPKSAGDVLTLLDATNTVFEK-ANQPIITMSMAGTGVISRLAGEVFGSAMTFGAAKKASAPGQIDVNELRHVLDLLHKQF
4CNO Chain:C ((1-250))
MKTVTVKNLIIGEGMPKIIVSLMGRDINSVKAEALAYREATFDILEWRVDHFMDIASTQSVLTAARVIRDAMPDIPLLFTFRSAKEGGEQTITTQHYLTLNRAAIDSGLVDMIDLELFTGDADVKATVDYAHAHNVYVVMSNHDFHQTPSAEEMVLRLRKMQALGADIPKIAVMPQSKHDVLTLLTATLEMQQHYADRPVITMSMAKEGVISRLAGEVFGSAATFGAVK----PGQIAVNDLRSVLMILH---
General information:
TITO was launched using:
RESULT:
Template:
4CNO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -137019 for 2119 contacts (-64.7/contact) +
2D Compatibility (PS) -27030 + (NN) -13593 + (LL) 640
1D Compatibility (HY) -24400 + (ID) 6700
Total energy: -208102.0 ( -98.21 by residue)
QMean score : 0.567
(partial model without unconserved sides chains):
PDB file :
Tito_4CNO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4CNO-query.scw
PDB file :
Tito_Scwrl_4CNO.pdb
: