Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-MTAFDLEDFLTTAITDYAKEKVEAGTWDEEESLAKSQDSFNKLLYDGITTPNEYLYSII--SGEKIGYIWFHVDETRS--GKHAFIYDFVIFEAFRGKGFGTKTLAALDVLAKEMQITKIGLHVFAHNQTAIGLYNKVGFQNTDITMAKYL
1VKC Chain:A ((10-158))
EYTIVDGEEYIEEIKKLDREISYSFV--RFPISYEEYEERHEELFESLLSQGEHKFFVALNERSELLGHVWICITLDTVDYVKIAYIYDIEVVKWARGLGIGSALLRKAEEWAKERGAKKIVLRVEIDNP-AVKWYEERGYKARALIMEKPI
General information:
TITO was launched using:
RESULT:
Template:
1VKC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -88403 for 941 contacts (-93.9/contact) +
2D Compatibility (PS) -15150 + (NN) -1084 + (LL) 260
1D Compatibility (HY) -7600 + (ID) 1550
Total energy: -113527.0 ( -120.65 by residue)
QMean score : 0.587
(partial model without unconserved sides chains):
PDB file :
Tito_1VKC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VKC-query.scw
PDB file :
Tito_Scwrl_1VKC.pdb
: