Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
----MKDILRDIGVIARALDSISNIEFKELNLAKGQFIYLVRICENQGIIQEKLVDILKIDRTTASRAIKNLEKNGLIIKKQNKNNKKNKLLFPTEKGQQLYPLIIRE-NEYSNAVALKGFTEAEINMLTDALKKVKENIADDWLYVKKGNKRSY
1JGS Chain:A ((1-138))
LFNEIIPLGRLIHMVNQKKDRLLNEYLSPLDITAAQFKVLCSIRCAACITPVELKKVLSVDLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAICEQCHQLVGQDLHQELTKNLTADEVATLEYLLKKVLP-----------------
General information:
TITO was launched using:
RESULT:
Template:
1JGS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -45207 for 810 contacts (-55.8/contact) +
2D Compatibility (PS) -14004 + (NN) -2178 + (LL) 836
1D Compatibility (HY) -7200 + (ID) 1500
Total energy: -69253.0 ( -85.50 by residue)
QMean score : 0.409
(partial model without unconserved sides chains):
PDB file :
Tito_1JGS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JGS-query.scw
PDB file :
Tito_Scwrl_1JGS.pdb
: