Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | LTKFSEFGLDEKIVKSVNRMGFEEATPIQEKTIP--LGLEGKDLIGQAQTGTGKTAAFGLPMI-HKIDQKSNN---VQALIIAPTRELAIQVSEELYKLSYD-----KHVRVLAVYGGSDISRQIRSLKK-NPQIVVGTPGRILDHINRRTLKL-DHVETLVLDEADEMLNMGFIDDIETI---LKEVPAER----QTLLFSATMPDPIRRIGERFMHSPELIRIKAKE-----------MTALLIEQF----FVKVHEKEKFDVLSRLLDVQAPELAIVFGRTKRRVDELSRALD---MRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVEETTKKRMQPLQAPTWDEAFAGQLRVATEKIQEAITEENLADYKTFANELLEKYDATDIAAAMLKMLAKEPDKTPVHITEERPLPSRGGGGYKGKNGKGGKGGGYRGGSGKGGSYRDRNNSGKGRRSGGGSGGGSGSGGGGNRDRRGGGEQRSGGNKGNYSQKSK |
| 3SQX Chain:A ((28-408)) | --------LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKI-HDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKK-----QIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELED------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3SQX.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -156324 for 2776 contacts (-56.3/contact) +
2D Compatibility (PS) -36924 + (NN) -13309 + (LL) 3012
1D Compatibility (HY) -30800 + (ID) 6600
Total energy: -240945.0 ( -86.80 by residue)
QMean score : 0.542
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