Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKTINSVDTKEFLNHQVANLNVFTVKIHQIHWYMRGHNFFTLHEKMDDLYSEFGEQMDEVAERLLAIGGSPFSTLKEFLENASVEEAPYTKPKTMDQLMEDLVGTLELLRDEYQQGIELTDKEGDNVTNDMLIAFKASIDKHIWMFKAFLGKAPLE
1QGH Chain:B ((7-156))
------VDTKEFLNHQVANLNVFTVKIHQIHWYMRGHNFFTLHEKMDDLYSEFGEQMDEVAERLLAIGGSPFSTLKEFLENASVEEAPYTKPKTMDQLMEDLVGTLELLRDEYKQGIELTDKEGDDVTNDMLIAFKASIDKHIWMFKAFLGKAPLE
General information:
TITO was launched using:
RESULT:
Template:
1QGH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -51856 for 1114 contacts (-46.5/contact) +
2D Compatibility (PS) -16632 + (NN) -13449 + (LL) 420
1D Compatibility (HY) -22000 + (ID) 7400
Total energy: -110917.0 ( -99.57 by residue)
QMean score : 0.504
(partial model without unconserved sides chains):
PDB file :
Tito_1QGH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1QGH-query.scw
PDB file :
Tito_Scwrl_1QGH.pdb
: