Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDSEKIDYLARLWIMEAAAKIKQSFKET--LDIDVKSGRNDLVTNMDKETEAFFVQQIKDHFPDHCLFGEEGMASDVTDLDGVVWILDPIDGTLNFVEQQRDFAISLAVYEDGIGRLAYIYDVTRDELYFGEKGKGATVNGRTIPKLDPAIDLKDTLLIANLSVTRKF-----PTMWEAVK-VSRGLRLHGAASLEYMDVATGRAGAYLSANLAPWDIAAGKIIVEELGGKVTRINGEKINMLEKGSSIVASPKIHQTLLDNYLP
2QFL Chain:A ((3-259))
----PMLNIAVRAARKAGNLIAKNYETPDAVEASQKG-SNDFVTNVDKAAEAVIIDTIRKSYPQHTIITEESGELEGT-DQDVQWVIDPLDGTTNFIKRLPHFAVSIAVRIKGRTEVAVVYDPMRNELFTATRGQGAQLNGYRLRGST-ARDLDGTILATGFPFKAKQYATTYINIVGKLFNECADFRATGSAALDLAYVAAGRVDGFFEIGLRPWDFAAGELLVREAGGIVSDFTGGHN-YMLTGNIVAGNPRVVKAMLANMRD
General information:
TITO was launched using:
RESULT:
Template:
2QFL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -132126 for 2209 contacts (-59.8/contact) +
2D Compatibility (PS) -26927 + (NN) -11488 + (LL) -260
1D Compatibility (HY) -14000 + (ID) 3800
Total energy: -188601.0 ( -85.38 by residue)
QMean score : 0.581
(partial model without unconserved sides chains):
PDB file :
Tito_2QFL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2QFL-query.scw
PDB file :
Tito_Scwrl_2QFL.pdb
: