Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFKKLFRQDENILNSELAEDLPIPRHVAIIMDGNGRWAKKRFLPRIAGHKEGMDVVKRVTRYANAIGIDVLTLYAFSTENWKRPTDEVDFLMKLPVEFFDSFVPELIEENVRVNVMGYRENLPDHTMRAVEKAIADTAHCTGLTLNFALNYGGRSEIITAAKEAMKELELEGKSADDLTEEKLNDHLMSSGLGDPDLLIRTSGELRLSNFMLWQLAYSEFYFTDTHWPDFSKEDFLQAIIEYQNRSRRFGGL
2VG3 Chain:B ((55-282))
----------------------LPNHVAIVMDGNGRWATQRGLARTEGHKMGEAVVIDIACGAIELGIKWLSLYAFSTENWKRSPEEVRFLMGFNRDVVRRRRDTLKKLGVRIRWVGSRPRLWRSVINELAVAEEMTKSNDVITINYCVNYGGRTEITEATREIAREVAAGRLNPERITESTIARHLQRPDIPDVDLFLRTSGEQRSSNFMLWQAAYAEYIFQDKLWPDYDRRDLWAACEEYASRTRRFG--
General information:
TITO was launched using:
RESULT:
Template:
2VG3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -121093 for 1817 contacts (-66.6/contact) +
2D Compatibility (PS) -24914 + (NN) -9469 + (LL) 1708
1D Compatibility (HY) -17200 + (ID) 4950
Total energy: -175918.0 ( -96.82 by residue)
QMean score : 0.533
(partial model without unconserved sides chains):
PDB file :
Tito_2VG3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VG3-query.scw
PDB file :
Tito_Scwrl_2VG3.pdb
: