Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKENNFISLAKQA---REFAYVPYSKFPVGAALVTKDDEVVLGCNIENASFGLTNCAERTAIFKAVSEGKRDFKQLVVVADTDGPVSPCGACRQVISEFCAPDMPVILTNLTGKTATVTVKELLPGAFTSEDML
3R2N Chain:B ((5-125))
MGDVNWDTLQKAAVAARANSYAPYSNFPVGVAGFVNDGRLITGVNVENASYGLALCAECSMISALYATGGGRLVAVYCVDGNGDSLMPCGRCRQLLYEHGGPELKIMT-----PKGVQTMAQLLPQ--------
General information:
TITO was launched using:
RESULT:
Template:
3R2N.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -60392 for 910 contacts (-66.4/contact) +
2D Compatibility (PS) -12864 + (NN) -2750 + (LL) 740
1D Compatibility (HY) -9200 + (ID) 2100
Total energy: -86566.0 ( -95.13 by residue)
QMean score : 0.527
(partial model without unconserved sides chains):
PDB file :
Tito_3R2N.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3R2N-query.scw
PDB file :
Tito_Scwrl_3R2N.pdb
: