Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTIGIIGAMEEEVELLKNSMSSVEEIVIGGAKFYIGEIASKEVVLLESGIGKVNAALGTTLMADRFKPEVIINTGSAGGMAEGLAVGDVIISDRLAYGDVDVTEFGYTYGQVPRMPAFYQGDAVLLKKAETIYREYFATSENKAVYGLVVTNDSFIMRPDQHEIIRTFFPDVKAVEMEAAAIAQVAYQFDIPFLIIRAISDLANQEATISFDEFIHLAAKQSATCIIELLKTI
4G41 Chain:B ((6-234))
MKIGIIAAMEEELSLLLANLLDAQEHQVLSKTYYTGRFGKHELILVQSGVGKVMSAMTVAILVEHFKAQAIINTGSAGAVASHLAIGDVVVADRLVYHDVDATAFGYAYGQMAGQPLYYDCDPQFV----AIFKQVLKHEKTNGQVGLIATGDSFVAGQDKIDQIKTAFSNVLAVEMEGAAIAQAAHTAGKPFIVVRAMSDTAAHDANITFDQFIIEAGKRSAQILMTFLENL
General information:
TITO was launched using:
RESULT:
Template:
4G41.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -191236 for 2060 contacts (-92.8/contact) +
2D Compatibility (PS) -24998 + (NN) -13717 + (LL) 376
1D Compatibility (HY) -21200 + (ID) 4850
Total energy: -255625.0 ( -124.09 by residue)
QMean score : 0.681
(partial model without unconserved sides chains):
PDB file :
Tito_4G41.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4G41-query.scw
PDB file :
Tito_Scwrl_4G41.pdb
: