Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VNDIIHDYLLKNIPKSSPFFKELEAYAKENEVPIMEPDSLYCLLQILDIQKPKRILELGTAIGYSALKMADKLPDAEIITVERDEERYEQAIHNIQRYGASDRVKVLLTDAIEGAEEILAHGPFDAIFIDAAKAQYEKFFHIYTVSLAENGVIYSDNVLFKGLALDMTPE-KQRKLRVARKMRHFNDFLVTHPDFETTTIPLGDGLSISKRKKTGGVS
3NTV Chain:A ((22-231))
-DDLNKKYLIDLHQHQNSSIEVLREFAEVNEVPIVDRLTLDLIKQLIRMNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVN-DKVYDMIFIDAAKAQSKKFFEIYTPLLKHQGLVITDNVLYHGFVSDIGIVRSRNVRQMVKKVQDYNEWLIKQPGYTTNFLNIDDGLAISIKG------
General information:
TITO was launched using:
RESULT:
Template:
3NTV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -93526 for 1654 contacts (-56.5/contact) +
2D Compatibility (PS) -22959 + (NN) -14950 + (LL) 272
1D Compatibility (HY) -18800 + (ID) 3450
Total energy: -153413.0 ( -92.75 by residue)
QMean score : 0.519
(partial model without unconserved sides chains):
PDB file :
Tito_3NTV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NTV-query.scw
PDB file :
Tito_Scwrl_3NTV.pdb
: