Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
----MEIKDLQDYVAIVNDWPKKGIVFKDITPLMNDGEAYRFATDKIVEYAKE----LKIDIIVGPEARGFIIGCPVAYALGIGFAPVRKPGKLPRETIEMEYDLEYGTNKLSMHSDAIKPGQRVLITDDLLATGGTIEATIKLVEELGGIVAGCAFLIELKELEGHKKLNGYDRLILMKL
1G2Q Chain:A ((1-178))
MPIASYAQELKLALHQYPNFPSEGILFEDFLPIFRNPGLFQKLIDAFKLHLEEAFPEVKIDYIVGLESRGFLFGPTLALALGVGFVPVRKAGKLPGECFKATYEKEYGSDLFEIQKNAIPAGSNVIIVDDIIATGGSAAAAGELVEQLEANLLEYNFVMELDFLKGRSKLNAPVFTLL---
General information:
TITO was launched using:
RESULT:
Template:
1G2Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -128461 for 1319 contacts (-97.4/contact) +
2D Compatibility (PS) -17972 + (NN) 619 + (LL) 448
1D Compatibility (HY) -14400 + (ID) 3200
Total energy: -162966.0 ( -123.55 by residue)
QMean score : 0.425
(partial model without unconserved sides chains):
PDB file :
Tito_1G2Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1G2Q-query.scw
PDB file :
Tito_Scwrl_1G2Q.pdb
: