Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--MKIDILSIFPDMFSGVTGNSIIKKAIENERVAVEVTDFREYAEGKHHIVDDYPYGGGAGMLLKAQPIFDAVQAVKEKQPETKPRVILMDPAGKRFNQKMAEEFAEEEHLVFICGHYEGYDERIREHLVTDEVSIGDYILTGGEIGAMIVMDSVIRLLPGVLGNKDSAVTDSFSTGLLEHPHYTRPADFRGMKVPDILLSGNHAWIEEWRDKESLKRTYERRPDLLKNYPLTDKQKTWLKEWSDSK------
1UAL Chain:A ((19-270))
SHMWIGVISLFPEMFKAITEFGVTGRAVKHNLLKVECWNPRDFTFDKHKTVDDRPYGGGPGMLMMVQPLRDAIHTAKAAAGE-GAKVIYLSPQGRKLDQGGVTELAQNQKLILVCGRYEGIDERLIQTEIDEEWSIGDYVLTGGELPAMTLIDAVARFIPGVLS---------FADGLLDCPHYTRPEVLEGLTVPPVLMSGHHEEIRKWRLKQSLQRTWLRRPELLEGLALTDEQRKLLKEAQAEHNSLEHH
General information:
TITO was launched using:
RESULT:
Template:
1UAL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -144990 for 1721 contacts (-84.2/contact) +
2D Compatibility (PS) -25722 + (NN) -8953 + (LL) 216
1D Compatibility (HY) -23600 + (ID) 5200
Total energy: -208249.0 ( -121.00 by residue)
QMean score : 0.497
(partial model without unconserved sides chains):
PDB file :
Tito_1UAL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1UAL-query.scw
PDB file :
Tito_Scwrl_1UAL.pdb
: