Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-LKYCLVEKDTCIACGACSIHAP-DVFDYDT-----EGLAFNILDNNTGTKEIPEDLVEMVIDAEFACPSLSIKVSDSSFH-
1KP6 Chain:A ((1-79))
NNAFCAGFGLSCKWECWCTAHGTGNELRYATAAGCGDHLSKSYYDARAGHCLFSDDLRNQFYSH---CSSLNNNMSCRSLSK
General information:
TITO was launched using:
RESULT:
Template:
1KP6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -33556 for 477 contacts (-70.3/contact) +
2D Compatibility (PS) -7303 + (NN) -1601 + (LL) 380
1D Compatibility (HY) -2400 + (ID) 800
Total energy: -45280.0 ( -94.93 by residue)
QMean score : 0.311
(partial model without unconserved sides chains):
PDB file :
Tito_1KP6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KP6-query.scw
PDB file :
Tito_Scwrl_1KP6.pdb
: