Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNDVLTLLRNHRSFRKYKKGVEIPEEKLDAIIRAAQAAPSWINGQHYSIIAIKDQERKNKMAELC-GNQPYIAECSVFLCFVADFHRVKVA---SD---MHGK----------SF--QIAGE---EDLLMVAATDIGLCMQNALTAAESLDYGTICIGGLRRNITATAGFLNLPEF-VMPVVGLCIGVPDVEAPVKPRLPKEAVYFEETYQTDVMPLLEAYDQEIIPFSEREGFVSYTERLAKFYDRPYYPNLTEQIKERGFLGGK
3GE6 Chain:A ((8-211))
-TDFMEIVKGRRSIRNYDTNVKISKEEMTQILEEATLAPSSVNMQPWRFLVIDSEEGKATLAPLAKFNQVQVETSSAVIAVFGDMKAIDQLENIYDTAVEKGLMPQEVRDRQVPAIQGMYENVPASALKDSILIDSGLVSMQLMLVARAHGYDTNPIGGY--EKDQIAEAFGMEKDRYVPVMLLSIGKAVDAGYPSVRLPINDIADW-----------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3GE6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -148761 for 1270 contacts (-117.1/contact) +
2D Compatibility (PS) -20060 + (NN) -10074 + (LL) 4240
1D Compatibility (HY) -6800 + (ID) 2250
Total energy: -183705.0 ( -144.65 by residue)
QMean score : 0.539
(partial model without unconserved sides chains):
PDB file :
Tito_3GE6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GE6-query.scw
PDB file :
Tito_Scwrl_3GE6.pdb
: