Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTYPQLSKEVAPNEIEAEMITNRGTIRIKLFPEIAPKTVENFV-----------THSKNGYYDGLIFHRVIPEFMIQGGD-PDGRGTGGESIWGESFEDEFSTEAFNLRGALSMANAGPNTNGSQFFIVQKPDMPADMLGQMEQAGFPVEVIEAYKQGGTPWLDGRHTVFGHVIEGMDVVDEIANLPTGMQDKPVNDVVIEKINIK
2WFJ Chain:A ((24-173))
-----------------------GRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFITTKP---------------------------TPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRI------
General information:
TITO was launched using:
RESULT:
Template:
2WFJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -39581 for 1031 contacts (-38.4/contact) +
2D Compatibility (PS) -14736 + (NN) -7497 + (LL) 4128
1D Compatibility (HY) -9600 + (ID) 3600
Total energy: -70886.0 ( -68.75 by residue)
QMean score : 0.571
(partial model without unconserved sides chains):
PDB file :
Tito_2WFJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2WFJ-query.scw
PDB file :
Tito_Scwrl_2WFJ.pdb
: