Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKLKKVAMGITVVMASSLLLVGCGSSDDSSKDKKSTDTKQTETKKTAKTDGTMTDGTYKLEEKNFDDKGWKGFMSIEVKDGKITKANYD------YKNKDGKLKSEDADY-EKAMKDKVGTGPQEYLKQLSDSLVKNQSAASVEVVSGATHSSDAFINYANQLIQAAQKADTTTISINNLAKMEDGTYK----LEEQNYAHGYRVVFSMD------VKDGK------ITKSDYNYVDKDGKLKSDDADYEKNMKAKSGTG-PKEYIPALNKSLVEKQD--VAAVDTVSGATNSSNQFKIYAAQLQNAAQNGNTDTIKVYNLVEAE- |
4QFR Chain:C ((28-322)) | ---------YTTFMKSH----RCYDLIPTSSKLVVFDTSL-QVKKAFFALVTNGVRAAPLWDSK--KQSFVGMLTIT-DFINILHRYYKSALVQIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNK-IHRLPVIDPESGNTLYILTHKRILKFLKLF-------ITSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLDVSVTKALQHRVLKCYLHETLEAIINRLVEAEVHRLVVVDE----------------------HDVVKGIVSLSDILQALV |
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General information:
TITO was launched using:
| RESULT:
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Template: 4QFR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 79584 for 1794 contacts (44.4/contact) +
2D Compatibility (PS) -26718 + (NN) -4093 + (LL) 3836
1D Compatibility (HY) -14000 + (ID) 2400
Total energy: 36209.0 ( 20.18 by residue)
QMean score : 0.258
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