Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTNKRVAFILGGSGGIGKAVVQKLVEQNFAVAVHYAGNKAKAETLVENIVKSGGEAISVGGDVADEAQMIRAFDFIESQFGGIDVVINTAGIMKLSPIATLDM--DDFDLIQRTNVRGTFVVSKQA-ALRVRNG--GAIINFSTSVTRTSFPTYGAYVASKAGVESLTLILARELRGKDITVNAVAPGPTATPLFLTG-KDDKTIDNLAKATPLERLGQPEDIAETVAFLAGP-ARWVNGQVIFTNGGLA
1RWB Chain:F ((8-250))
----KVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEFGKLDVMINNAGLE--NPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKIPWPLFVHYAASKGGMKLMTKTLALEYAPKGIRVNNIGPGAINTPINAEKFADPEQRADVESMIPMGYIGEPEEIAAVAAWLASSEASYVTGITLFADGGM-
General information:
TITO was launched using:
RESULT:
Template:
1RWB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -124168 for 2045 contacts (-60.7/contact) +
2D Compatibility (PS) -25912 + (NN) -12740 + (LL) 628
1D Compatibility (HY) -15200 + (ID) 4100
Total energy: -181492.0 ( -88.75 by residue)
QMean score : 0.498
(partial model without unconserved sides chains):
PDB file :
Tito_1RWB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RWB-query.scw
PDB file :
Tito_Scwrl_1RWB.pdb
: