Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKVCFVCLGNICRSPMAEFVMANLDKEDS----L-SVESRATSTWEHGNPIHRGTQAILQRYQIPYINDKGSQPISKDDLAYFDYIIGMDEQNVKDLKALSQGTYDDKISLFC---------DGGVPDPWYTG--DFEETYRLVNDGCKQWLTLINNSRD
1D1Q Chain:A ((7-160))
KISVAFIALGNFCRSPMAEAIFKHEVEKANLENRFNKIDSFGTSNYHVGESPDHRTVSICKQHGVKI-NHK-GKQIKTKHFDEYDYIIGMDESNINNLKKIQPEGSKAKVCLFGDWNTNDGTVQTIIEDPWYGDIQDFEYNFKQITYFSKQFLKKEL----
General information:
TITO was launched using:
RESULT:
Template:
1D1Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -71923 for 1151 contacts (-62.5/contact) +
2D Compatibility (PS) -14773 + (NN) -3379 + (LL) -56
1D Compatibility (HY) -9200 + (ID) 2250
Total energy: -101581.0 ( -88.25 by residue)
QMean score : 0.496
(partial model without unconserved sides chains):
PDB file :
Tito_1D1Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1D1Q-query.scw
PDB file :
Tito_Scwrl_1D1Q.pdb
: