Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKVRGFELVSQFS--NKELLPKRETAHAAGYDLKVAK----KTVIEPGEITLVPTGIKAHMQPGEVLYLYDRSSNPRKKGIVLINSVGVIDGDYYNNQVNEGHIFAQMQNITDQAVILEEGERIVQAVFAPFL-----LADDDQATGMRTGGFGSTGK
3MDX Chain:A ((32-172))
-------LGIIRLEHAKGLDLPAYETAGSAGMDLRAAVAEDRQIVLLPGRRTLVPTGLILEIPQGYEVQIRPRSGLAFKNGITCLNTPGTIDSDY------RGEVKVLLINLGDDDFRIERGMRIAQAVFAPVIQPKIEERAK-----RGAGGF-----
General information:
TITO was launched using:
RESULT:
Template:
3MDX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -43381 for 827 contacts (-52.5/contact) +
2D Compatibility (PS) -13293 + (NN) -976 + (LL) 472
1D Compatibility (HY) -5600 + (ID) 2350
Total energy: -65128.0 ( -78.75 by residue)
QMean score : 0.364
(partial model without unconserved sides chains):
PDB file :
Tito_3MDX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3MDX-query.scw
PDB file :
Tito_Scwrl_3MDX.pdb
: