Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQLKDKNIFITGSSRGIGLAIAHQFAQLGANIVLNGRSEISEDLIAE-FADYGVKVIAISGDVSSFEDANRMIKEAIASLGSVDVLVNNAGITNDKLMLKMTVEDFESVLKINLTGAFNMTQSVLKPMTKARQGAIINISSVVGLTGNVGQANYAASKAGLIGFTKSVAREVAARGIRVNAIAPGFIESDMTDVIPEKMQEAILAQIPMKRIGKGKEVAQVASFLAEQ--EYLTGQVIAIDGGMTMQ
4BO8 Chain:C ((23-268))
MSLQGKVALVTGASRGIGQAIALELGRLGAVVIGTATSASGAEKIAETLKANGVEGAGLVLDVSSDESVAATLEHIQQHLGQPLIVVNNAG------------DEWFDVVNTNLNSLYRLSKAVLRGMTKARWGRIINIGSVVG----AGQTNYAAAKAGLEGFTRALAREVGSRAITVNAVAPGFIDTDMTRELPEAQREALLGQIPLGRLGQAEEIAKVVGFLASDGAAYVTGATVPVNGGMYMS
General information:
TITO was launched using:
RESULT:
Template:
4BO8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -140172 for 1888 contacts (-74.2/contact) +
2D Compatibility (PS) -24399 + (NN) -5675 + (LL) 1216
1D Compatibility (HY) -17200 + (ID) 5300
Total energy: -191530.0 ( -101.45 by residue)
QMean score : 0.633
(partial model without unconserved sides chains):
PDB file :
Tito_4BO8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4BO8-query.scw
PDB file :
Tito_Scwrl_4BO8.pdb
: