Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLEKCP---IIALDFSDLASVTTFLEHFPKEELLFVKIGMELYYSEGP----SIIRYIKSLGHRIFLDLKLHDIPNTVRSSM-SVLAKLGIDMTNVHAAGGVEMMKAAREGLGE-------GPILLAVTQLTSTSQEQMQVDQHINLSVVDSVCHYAQKAQEAGLDGVVASAQEVKQIKKQTNEHFICLTPGIRPPQTNQLDDQKRTMTPEQARIVGADYIVVGRPITKA-ENPYQAYLEIKEEWNRIK
1DBT Chain:A ((1-237))
---MKNNLPIIALDFASAEETLAFLAPFQQE-PLFVKVGMELFYQEGPSIVKQLKER----NCELFLDLKLHDIPTTVNKAMK-RLASLGVDLVNVHAAGGKKMMQAALEGLEEGTPAGKKRPSLIAVTQLTSTSEQIMKDELLIEKSLIDTVVHYSKQAEESGLDGVVCSVHEAKAIYQAVSPSFLTVTPGIRM-SEDAANDQVRVATPAIAREKGSSAIVVGRSITKAE-DPVKAYKAVRLEWEGI-
General information:
TITO was launched using:
RESULT:
Template:
1DBT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -109038 for 1842 contacts (-59.2/contact) +
2D Compatibility (PS) -23834 + (NN) -9998 + (LL) 1008
1D Compatibility (HY) -16400 + (ID) 5700
Total energy: -163962.0 ( -89.01 by residue)
QMean score : 0.522
(partial model without unconserved sides chains):
PDB file :
Tito_1DBT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DBT-query.scw
PDB file :
Tito_Scwrl_1DBT.pdb
: