Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTTVYLSLGSNIGDRETFLKQALFSIDHLQKTKVAQISAIYETAAWGNTNQEDFFNICCQVETDLAPFELLDYCQEIEKRLKRVRH-EHWGPRTIDIDILLFGNQVINQEDLVVPHPYMTKRAFVLVPLLEIAPQLSLPNGSKLEDYL-----EKLNLGEVHYLKPVE
1TMM Chain:B ((1-156))
-TVAYIAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVALETSLAPEELLNHTQRIELQQGRVRKAERAGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGFMLWPLFEIAPELVFPDGEMLRQILHTRAFDKLNKW---------
General information:
TITO was launched using:
RESULT:
Template:
1TMM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -125389 for 1165 contacts (-107.6/contact) +
2D Compatibility (PS) -15888 + (NN) -4960 + (LL) 744
1D Compatibility (HY) -13600 + (ID) 3300
Total energy: -162393.0 ( -139.39 by residue)
QMean score : 0.571
(partial model without unconserved sides chains):
PDB file :
Tito_1TMM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1TMM-query.scw
PDB file :
Tito_Scwrl_1TMM.pdb
: