Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ---------------------------------------------MKNLNLLMKPKTSSKQKKEKTKKREVLPTTLNTLAYQGLFPNGLMQVSPDYF----SQSYLLGDVN-------------YQTVGLEEKEAIVEKYSNLINSLDDKTNFQLTIFNKKVNLEQFRKSVLYPLQED----GFDSYREELNRMM----DSNLEAGENNFSAVKLISFGKSDQAPKLAYRSLSQI-GEYFKSGLSEIEASFTLLTGEERVNNLADMLR------GENHLPFTYKDLVLSGQTTK----HFIAPTSISF--KHKNHIEIDNRLLQIVYV---RDYGMELGDKFIRELMQSDLEVVISL---------------HAKGSTKSE--------AMKKLRTKKTLMESQKIGEQQKMARSGIYLDKVGHALESNIDEAEDLLKTMTQTGDKLFDTVFLIG----------FFADNEEQLKQSLDIIKQVAGSNDLIIDNLTYMQEAALNSLLPFGKNCLEGVSR----SLLTSNIAVNSPWTSVDLQ-DAGGKFYGINQISSNIITI------DRGKLNTPSGLILGTSGSGK-GMATKHEIISTKLKEADKDTEIIIVDPENEYSVSGQAFGG-----EIID----------IAPDSRTFL---NVLDLS--DDNLDEDPVKVKSEFLLSWIG--KLLDRKMDGREKSII-------DRVTRLTYKHFEEPSLVEWVFVLSQQPEQEARDLAL----DMELYVE---GSLDIFSH-------KTTIQTDSHFLIY-NVKKLGDELKQIALMVIFDQ-IWNRVVKNQKLGKKTWIYFDEMQLLLLDQFASDFFFKLWSRVRKYGATPTGITQNVETL-------------LLDANGRRIIANSEFMILLKQAKSDREELVH-----------MLGLSKELEKYLVNPEKGAGLIKAGSTVVPFRNKIPHQTKLFDIMSTDPDKMRT |
| 4WD9 Chain:A ((5-1006)) | SFKAQPFLVRNTILCPNDKRSFTEYTQVIETVSKNKVFLEQLLLANPKLYDVMQKYNAGLLKKKRVKKLFESIYKYYKRSYLRSTPFGLFSETSIGVFSKSSQYKLMGKTTKGIRLDTQWLIRLVHKMEVDFSKKLSFTRNNANYKFGDRVFQVYTINSSELEEVNIKYTNVYQIISEFCENDYQKYEDICETVTLCYGDEYRELSEQYLGSLIVNHYLISNLQKDL----LSDFSWNTFLTKVEAIDEDKKYIIPLKKVQKFIQEYSEIEIGEGIEKLKEIYQEMSQILENDNYIQIDLISDSEINFDVKQKQQLEHLAEFLGNTTKSVRRTYLDDYKDKFIEKY-GVDQEVQITELFDSTFGIGAPYNYNHPRNDFYESEPSTLYYSEEEREKYLSMYVEAVKNHNVINLDDLESHYQKMDLEKKSELQGLELFLNLAKEYEKDIFILGDIVGNNNLGGASGRFSALSPELTSYHRTIVDSVERENEN--KEITSCEIVFLPENIRHANVMHTSIMRRKVLPFFTSTSHNEVLLTNIYIGIDEKEKFYARDISTQEVLKFYITSMYNKTLFSNELRFLYEISLDDKFGNLPWELIYRDFDYIPRLVFDEIVISPA-KWKIWGRDVNSKMTIRELIQSKEIPKEFYIVNGDNKVYLSQKNPLDMEILESAIKKSSKRKDFIELQEYFEDENIINKGEKGRVADVVVPFIRAFIREKRVSVERREKLPFNEWLYLKLYISINRQNEFLLSYLPDIQKIVANLGGNLFFLRYTDPKPHIRLRIKCSDLFLAYGSILEILKRSRKNRIMSTFDISIYDQEV--ERYGGFDTLELSEAIFCADSKIIPNLLTLIKDTNNDWKVDDVSILVNYLYLKCFFQNDNKKILNFLNLVGDQIFYDKNFKELKHAIKNLFLKMIAQDFELQKVYSIIDSIIHVHNNRLIGIERDKEKLIYYTLQRLFVSE---ETKDFNLDLVSVSK--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4WD9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 7253 for 5247 contacts (1.4/contact) +
2D Compatibility (PS) -79839 + (NN) -5825 + (LL) 1296
1D Compatibility (HY) -30400 + (ID) 6450
Total energy: -113965.0 ( -21.72 by residue)
QMean score : 0.168
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