Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNRLSWEDYFMANAELISKRSTCDRAFVGAVLVKN-NRIIATGYNGGVSETDNCNEVGHYM-----EDGHCIRTVHAEMNALIQCAKEGISTNNTEIYVTHFPCINCTKALLQAGVKKITYKANYRPH-----PFAIELMEAKGVAYVQHDVPEVTLGMEE
2W4L Chain:A ((8-155))
-DYLEWPEYFMAVAFLSAQRSKDPNSQVGACIVNSENKIVGIGYNGMPNGCSDDVLPWRRTAENKLDTKYP-YVCHAELNAIMN------DVKGCSMYVALFPCNECAKLIIQAGIKEVIFMSDKYHDSDEATAAR-LLFNMAGVTFRKFIPKCSKIVIDF
General information:
TITO was launched using:
RESULT:
Template:
2W4L.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -71211 for 1005 contacts (-70.9/contact) +
2D Compatibility (PS) -15039 + (NN) -10408 + (LL) 1016
1D Compatibility (HY) -7200 + (ID) 1950
Total energy: -104792.0 ( -104.27 by residue)
QMean score : 0.432
(partial model without unconserved sides chains):
PDB file :
Tito_2W4L.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2W4L-query.scw
PDB file :
Tito_Scwrl_2W4L.pdb
: