Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIIIQRVNQASVSIEDDVVGSIEK----------GLVLLVGIAPEDTTEDIAYAVRKITSMRIFSDDEGKMNLSIQDIKGSVLSISQFTLFADTKKGNRPAFTGAADPVKANQFYDIFNQELA---NHVSVETGQFGADMQVSLINDGPVTIVLDTKNK
3KO9 Chain:B ((1-157))
MRVVIQRVKGAILSVR---------ELEIISEIKNGLICFLGIHKNDTWEDALYIIRKCLNLRLWNNDNKTWDKNVKDLNYELLIVSQFTLFGNTKKGNKPDFHLAKEPNEALIFYNKIIDEFKKQYNDDKIKIGKFGNYMNIDVTNDGPVTIYIDTHDI
General information:
TITO was launched using:
RESULT:
Template:
3KO9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -90410 for 962 contacts (-94.0/contact) +
2D Compatibility (PS) -14814 + (NN) -7144 + (LL) 404
1D Compatibility (HY) -14400 + (ID) 2750
Total energy: -129114.0 ( -134.21 by residue)
QMean score : 0.531
(partial model without unconserved sides chains):
PDB file :
Tito_3KO9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3KO9-query.scw
PDB file :
Tito_Scwrl_3KO9.pdb
: