Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSGLFITFEGPEGAGKTTVLQEIKNILTAEGL-------QVMATREPGGIDIAEQIREVILNENNILMDPKTEALLYAAARRQHLVEKVKPALEQGFIVLCDRFIDSSLAYQGYARGLGIDEVLSINEFAIGDMMPHVTVYFSIDPEEGLKRIYANGSREKNRLDLEKLDFHTKVQEGYQELMKRFPERFHSV-DAGQSKDLVVQDVLKVIDEALKKIQL
3LD9 Chain:B ((21-222))
--SMFITFEGIDGSGKTT-----QSHLLAEYLSEIYGVNNVVLTREPGGTLLNESVRNLLFKAQG--LDSLSELLFFIAMRREHFVKIIKPSLMQKKIVICDRFIDSTIAYQGYGQGIDCSLIDQLNDLVI-DVYPDITFIIDV-----------------------DMEFYYRVRDGFYDIAKKNPHRCHVIT-----------DINFVHLEVIKVLQM
General information:
TITO was launched using:
RESULT:
Template:
3LD9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -69613 for 1323 contacts (-52.6/contact) +
2D Compatibility (PS) -18900 + (NN) -11415 + (LL) 2828
1D Compatibility (HY) -18800 + (ID) 3400
Total energy: -119300.0 ( -90.17 by residue)
QMean score : 0.510
(partial model without unconserved sides chains):
PDB file :
Tito_3LD9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LD9-query.scw
PDB file :
Tito_Scwrl_3LD9.pdb
: