Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLVIAGLGNPGKNYENTRHNVGFMVIDQLAKEWNIELNQ-NKFNGLYGTGFVSGKKVLLVKPLTYMNLSGECLRPLMDYYDVDNEDLTVIYDDLDLPTGKIRLRTKGSAGGHNGIKSLIQHLGTSEFDRIRIGIGRPVNGMKVVDYVLGSFTKEEAPEIEEAVDKSVKACEASLSKPFLEVMNEFNAKV
4LWR Chain:A ((7-193))
ISLIVGLGNPGSEYAQTRHNAGFWFVEQLADKYGITLKNDPKFHGISGRGNIEGHDVRLLLPMTYMNRSGQSVVPFSKFYQIAPEAILIAHDELDMNPGVIRLKTGGGHGGHNGLRDIVPHIG-PNFHRLRIGIGHPGSKERVSGHVLGKAPSNEQSLMDGAIDHALSKVKLLVQGQVPQAMNQINAY-
General information:
TITO was launched using:
RESULT:
Template:
4LWR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -115438 for 1571 contacts (-73.5/contact) +
2D Compatibility (PS) -19656 + (NN) -4539 + (LL) 244
1D Compatibility (HY) -14000 + (ID) 3600
Total energy: -156989.0 ( -99.93 by residue)
QMean score : 0.628
(partial model without unconserved sides chains):
PDB file :
Tito_4LWR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LWR-query.scw
PDB file :
Tito_Scwrl_4LWR.pdb
: