Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFRIGQGFDVHQLVEGRPLIIGGIEIPYEKGLLGHSDADVLLHTVADACLGAVGEGDIGKHFPDTDPEFKDADSFKLLQHVWGIVKQKGYVLGNIDCTIIAQKPKMLPYIEDMRKRIAEGLEADVSQVNVKATTTEKLGFTGRAEGIAAQATVLIQKG
3F0D Chain:D ((24-179))
-FRIGQGYDVHQLVPGRPLIIGGVTIPYERGLLGHSDADVLLHAITDALFGAAALGDIGRHFSD--PRFKGADSRALLRECASRVAQAGFAIRNVDSTIIAQAPKLAPHIDAMRANIAADLDLPLDRVNVKAKTNEKLGYLGRGEGIEAQAAALVVR-
General information:
TITO was launched using:
RESULT:
Template:
3F0D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -114029 for 1302 contacts (-87.6/contact) +
2D Compatibility (PS) -16636 + (NN) -9571 + (LL) 12
1D Compatibility (HY) -14400 + (ID) 4700
Total energy: -159324.0 ( -122.37 by residue)
QMean score : 0.651
(partial model without unconserved sides chains):
PDB file :
Tito_3F0D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3F0D-query.scw
PDB file :
Tito_Scwrl_3F0D.pdb
: