Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMSSNEKRFPEGFLWGGAVAANQVEGAYNEGGKGLSTADVSPNGIMSPFDESMTSLNLYHNG---IDFYHRYKEDIALFAEMGFKAFRTSIAWTRIFPNGDEEEPNEEGLRFYDDLFDELLKHHIEPVVTISHYEMPLGLVKNYGGWKNRKVIEFYERYAKTVFKRYQHKVKYWMTFNEINVVLHAPFTGGGLVFEEGENKLNAMYQAAHHQFVASALAVKAGHDIIPDSKIGCMIAATTTYPMTSKPEDVFAA--MENERKTLFFSDVQARGAYPG----YMKRYLAENNIEIEMAEGDEELLKEHTVDYIGFSYYMSMAASTDPEELAKSGGNLLGGVKNPYLKSSEWGWQIDPKGLRITLNTLYDRYQKP-LFIVENGLGAVDKVEEDGTIQDDYRINYLRDHLIEAREAIADGVELIGYTSWGPIDLVSASTAEMKKRYGFIYVDRDNEGNGTFNRIKKKSFNWYQQVIATNGESL
2JAL Chain:B ((24-465))---NVKKFPEGFLWGVATASYQIEGSPLADGAGMS--------IWHTFSHTPGNVKNGDTGDVACDHYNRWKEDIEIIEKLGVKAYRFSISWPRILPEG-TGRVNQKGLDFYNRIIDTLLEKGITPFVTIYHWDLPFAL-QLKGGWANREIADWFAEYSRVLFENFGDRVKNWITLNEPWVVAIVGHLYG--VHAPGMRDIYVAFRAVHNLLRAHARAVKVFRETVKDGKIGIVFNNGYFEPASEKEEDIRAVRFMHQFNNYPLFLNPIYRGDYPELVLEFAREYLPENYKD-DMSEIQEK------IDFVGLNYYSGHLVKFDPDAPAK-----VSFVERDLPKTAM-GWEIVPEGIYWILKKVKEEYNPPEVYITENGAAFDDVVSEDGRVHDQNRIDYLKAHIGQAWKAIQEGVPLKGYFVWSLLDNFEWAEG-YSKRFGIVYVDYSTQ-----KRIVKDSGYWYSNVVKNNG---


General information:
TITO was launched using:
RESULT:

Template: 2JAL.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 2556 53913 21.09 124.80
target 2D structure prediction score : 0.56
Monomeric hydrophicity matching model chain B : 0.77

3D Compatibility (PKB) : 21.09
2D Compatibility (Sec. Struct. Predict.) : 0.56
1D Compatibility (Hydrophobicity) : 0.77
QMean score : 0.515

(partial model without unconserved sides chains):
PDB file : Tito_2JAL.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2JAL-query.scw
PDB file : Tito_Scwrl_2JAL.pdb: