Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-MARQVFDDKLLAVISGNSIGVLATIKHDGRPQLSNVQYHF-------DPRKLLIQVSIA----EPRAKTRNLRRDPRASILVDA-DDGWS---YAVAEGTAQLTPPAAAPDDDTVEALIALYRNIAGEHSDWDDYRQAMVTDRRVLLTLPISHVYGLPPGMR
4ZKY Chain:A ((5-143))
FDAVTAFAD--------APAAVLSTLNADGAPHLVPVVFAVHVPHVEGQPARIYTAVDAKRKTTRNLRRLANIDRDSRVSLLVDHYSDDWTQLWWVRADGVATTHHSG-DEVATGYALLRAKYHQYERVSLDGP------------VISVEVSRWASWQA---
General information:
TITO was launched using:
RESULT:
Template:
4ZKY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -47622 for 858 contacts (-55.5/contact) +
2D Compatibility (PS) -13567 + (NN) -4876 + (LL) 2184
1D Compatibility (HY) -6400 + (ID) 1550
Total energy: -71831.0 ( -83.72 by residue)
QMean score : 0.423
(partial model without unconserved sides chains):
PDB file :
Tito_4ZKY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4ZKY-query.scw
PDB file :
Tito_Scwrl_4ZKY.pdb
: