Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNSPLAPVGVFDSGVGGLTVARAIIDQLPDEDIVYVGDTGNGPYGPLTIPEIRAHALAIGDDLVGRGVKALVIACNSASSACLRDARERYQVPVVEVILPAVRRAVAAT--RNGRIGVIGTRATITSHAYQDAFAAARDTEIT-AVACPRFVDFVERGVTSGRQVLGLAQGYLEPLQRAEVDTLVLGCTHYPLLSGLIQLAMGENVTLVSSAEETAKEVVRVLTEIDLLRPHDAPPATRIFEATGDPEAFTKLAARFLGPVLGGVQPVHPSRIH
3UHF Chain:A ((21-271))
-QSNAMKIGVFDSGVGGLSVLKSLYEARLFDEIIYYGDTARVPYGVKDKDTIIKFCLEALDFFEQFQIDMLIIACNTASAYALDALRAKAHFPVYGVIDAGVEATIKALHDKNKEILVIATKATIKSEEYQKRLLS-QGYTNINALATGLFVPMVEEGIFEGDFLQSAMEYYFKN--ITTPDALILACTHFPLLGRSLSKYFGDKTKLIHSGDAIVEFLKERENI-DLKN----HKAKLHFYASSDVESLKNTAKIWLNL--------------
General information:
TITO was launched using:
RESULT:
Template:
3UHF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -184434 for 2211 contacts (-83.4/contact) +
2D Compatibility (PS) -27676 + (NN) -15735 + (LL) 1436
1D Compatibility (HY) -15200 + (ID) 3950
Total energy: -245559.0 ( -111.06 by residue)
QMean score : 0.627
(partial model without unconserved sides chains):
PDB file :
Tito_3UHF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3UHF-query.scw
PDB file :
Tito_Scwrl_3UHF.pdb
: