Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPLSGEYAPSPLDWSREQADTYMKSGGTEGTQLQGKPVILLTTVGAKTGKLRKTPLMRVEHDGQYAIVASLGGAPKNPVWYHNVVKNPRVELQDGTVTGDYDAREVFGDEKAIWWQRAVAVWPDYASYQTKTDRQIPVFVLTPVRAGG
3R5Z Chain:A ((6-145))
----GEYEPSPSDWARKQVETYENSGGTEGTTLQGKPVVVLTTKGAKTGKLRKTPLMRVEHNGEYAVVASLGGAPKHPVWYHNIKAEPHVELRDGTEVGDYTAREVTGEEKRVWWERAVEVWPDYAEYQTKTTREIPVFVLTPR----
General information:
TITO was launched using:
RESULT:
Template:
3R5Z.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -46773 for 995 contacts (-47.0/contact) +
2D Compatibility (PS) -15737 + (NN) -9689 + (LL) 116
1D Compatibility (HY) -12000 + (ID) 5250
Total energy: -89333.0 ( -89.78 by residue)
QMean score : 0.528
(partial model without unconserved sides chains):
PDB file :
Tito_3R5Z.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3R5Z-query.scw
PDB file :
Tito_Scwrl_3R5Z.pdb
: