Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSAYKTVVVGTDGSDSSMRAVDRAAQIAGA-DAKLIIASAYLPQHED-ARA-ADILKDESYKVT---GTAPIYEILHDAKERAHNAGAKNVEERPIVGAPVDALVNLADEEKADLLVVGNVGLSTIAG-RLLGSVPANVSRRAKVDVLIVHTT
3AB8 Chain:A ((1-150))
----MRILLATDGSPQARGAEALAEWLAYKLSAPLTVLFVVDTRLARIPELL---PVPVLRTELERALALRGEAVLERVRQSALAAGVA-VEAVLEEGVPHEAILRRAR--AADLLVLGRSGEAHGDGFGGLGSTADRVLRASPVPVLLAPGE
General information:
TITO was launched using:
RESULT:
Template:
3AB8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -52183 for 1063 contacts (-49.1/contact) +
2D Compatibility (PS) -14864 + (NN) -4501 + (LL) 816
1D Compatibility (HY) -1200 + (ID) 1750
Total energy: -73682.0 ( -69.32 by residue)
QMean score : 0.592
(partial model without unconserved sides chains):
PDB file :
Tito_3AB8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3AB8-query.scw
PDB file :
Tito_Scwrl_3AB8.pdb
: