Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTRVVVIGSGFAGLWAALGAARRLDELAVLAGTVDVMVVSNKPFHDI-RVRNYEADLSA-C----RIPLGDVLGPAGVAHVTA-EVTAIDADGRRVTTSTGASYSYDRLVLASGSHVVKPALPGLAE-FGFDVDTYDGAVRLQQHLQGLAGGPLTSAAATVVVVGAGLTGIETACELPGRLHALFARGDGVTPRVVLIDHNPFVGSD-MGLSARPVIEQALLDNGVETRTGVSVAAVSPG----GVTLSSGERLAAATVVWCAGMRAS-RLTEQLPVARDRLGRLQVDDYLRVIGVPAMFAAGDVAAARMDD-EHLSVMSCQHGRPMGRYAGCNVINDLFDQPLLALRIPW-YV-TVLDLGSAGAVYTEGWERKVVSQGAPAKTTKQSINTRRIYPPLNGSRADLLAAAAPRVQPRP |
| 3EF6 Chain:A ((3-335)) | -THVAIIGNGVGGFTTAQALRAEG-------FEGRISLIGDEPHLPYDRPSLSKAVLDGSLERPPILAEADWYGEARIDMLTGPEVTALDVQTRTISLDDGTTLSADAIVIATGSRARTMALPGSQLPGVVTLRTYGDVQVLRDSWT---------SATRLLIVGGGLIGCEVATTARKLG-----------LSVTILEAGDELLVRVLGRRIGAWLRGLLTELGVQVELGTGVVGFSGEGQLEQVMASDGRSFVADSALICVGAEPADQLARQAGLACD--RGVIVDHCGAT-LAKGVFAVGDVASWPLRAGGRRSLETYMNAQRQAAAVAAAILGKNVSAPQLPVSWTEIAGHRMQMAGDIE----------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3EF6.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -260519 for 2731 contacts (-95.4/contact) +
2D Compatibility (PS) -34028 + (NN) -7133 + (LL) 5064
1D Compatibility (HY) -10400 + (ID) 3650
Total energy: -310666.0 ( -113.76 by residue)
QMean score : 0.452
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