Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-MTTARDIMNAGVT------CVGEHETLTAAAQYMREHDIGALPICGDDD--RLHGMLTDRDIVIKGLAA-----------------------GLDPNTATAGELARDSIYYVDANASIQEMLNVMEEHQVRRVPVISEHRLVGIVTEADIARHLPEHAIVQFVKAICSPMALAS
2J9L Chain:A ((9-182))
HKTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVSTSIIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTHNGRLLGIITKKDVLKHIAQMANFN------EFLEV--
General information:
TITO was launched using:
RESULT:
Template:
2J9L.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -80211 for 883 contacts (-90.8/contact) +
2D Compatibility (PS) -14746 + (NN) -4213 + (LL) 908
1D Compatibility (HY) -11600 + (ID) 1400
Total energy: -111262.0 ( -126.00 by residue)
QMean score : 0.328
(partial model without unconserved sides chains):
PDB file :
Tito_2J9L.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2J9L-query.scw
PDB file :
Tito_Scwrl_2J9L.pdb
: