Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMDLSQRLAGRVAVITGGGSGIGLAAGRRMRAEGATIVV---GDV----DVEAGGAAADELSGLFVPTDVCDEDAVNGLFDGAAETYGRIDIAFNNAGISPPEDNLIENTELAAWQRVQDVNLKSVYLCCRAALRHMVLAGKGSIVNTASFVAVMGSATSQISYTASKGGVLAMSRELGVQFARQGIRVNALCPGPVNTPLLQE---LFAKN--PERAARRMV--HVPLGRFAEPDEIAAAVAFLASDDASFITASTFLVDGGISSAYVTPL
2ZTV Chain:D ((2-259))
-------LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQMGRIDILVNNAGIQ--HTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASAHGLVASA-NKSAYVAAKHGVVGFTKVTALETAGQGITANAICPGWVRTPLVEKQIS-----VDQETAARELLSEKQPSLQFVTPEQLGGTAVFLASDAAAQITGTTVSVDGGWTA------
General information:
TITO was launched using:
RESULT:
Template:
2ZTV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -148237 for 2008 contacts (-73.8/contact) +
2D Compatibility (PS) -25831 + (NN) -9215 + (LL) 1432
1D Compatibility (HY) -15200 + (ID) 5000
Total energy: -202051.0 ( -100.62 by residue)
QMean score : 0.478
(partial model without unconserved sides chains):
PDB file :
Tito_2ZTV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2ZTV-query.scw
PDB file :
Tito_Scwrl_2ZTV.pdb
: