Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLITAIVKPFTLDDVKTSLEDAGVLGMTVSEIQGYGRQKGHTEVYRGAEYSVDFVPKVRIEVVVDDSIVDKVVDSIVRAARTGKIGDGKVWVSPVDTIVRVRTGERGHDAL
4CO4 Chain:A ((1-108))
MKLVMAIIKPFKLDEVREALTSLGIQGLTVSEVKGF------------------FLPKVKVEVAVSDDQYEQVVEAIQKAANTGRIGDGKIFVLDIAQAVRIRTGETN----
General information:
TITO was launched using:
RESULT:
Template:
4CO4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -64313 for 582 contacts (-110.5/contact) +
2D Compatibility (PS) -9868 + (NN) -1476 + (LL) 1068
1D Compatibility (HY) -10400 + (ID) 2300
Total energy: -87289.0 ( -149.98 by residue)
QMean score : 0.677
(partial model without unconserved sides chains):
PDB file :
Tito_4CO4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4CO4-query.scw
PDB file :
Tito_Scwrl_4CO4.pdb
: